The origin and evolution of emerged swine acute diarrhea syndrome coronavirus with zoonotic potential.

Swine acute diarrhea syndrome coronavirus (SADS-CoV) is a newly discovered alphacoronavirus with zoonotic potential that causes diarrhea and vomiting mainly in piglets. Having emerged suddenly in 2017, the prevailing opinion is that the virus originated from HKU2, an alphacoronavirus whose primary host is bats, and at some unknown point achieved interspecies transmission via some intermediate. Here, we further explore the evolutionary history and possible cross-species transmission event for SADS-CoV. Coevolutionary analysis demonstrated that HKU2 may have achieved host switch via SADS-related (SADSr)-CoV, which was isolated from the genus Rhinolophus in 2017. SADS-CoV, HKU2, and SADSr-CoV share similar codon usage patterns and showed a lower tendency to use CpG, which may reflect a method of immune escape. The analyses of virus-host coevolution and recombination support SADSr-CoV is the direct source of SADS-CoV that may have undergone recombination events during its formation. Structure-based spike glycoprotein variance analysis revealed a more nuanced evolutionary pathway to receptor recognition for host switch. We did not find a possible positive selection site, and the dN/dS of the S gene was only 0.29, which indicates that the current SADS-CoV is slowly evolving. These results provide new insights that may help predict future cross-species transmission, and possibly surveil future zoonotic outbreaks and associated public health emergencies.

Target area distillation and section attention segmentation network for accurate 3D medical image segmentation.

3D medical image segmentation has an essential role in medical image analysis, while attention mechanism has improved the performance by a large margin. However, existing methods obtained the attention coefficient in a small receptive field, resulting in possible performance limitations. Radiologists usually scan all the slices first to have an overall idea of the target, and then analyze regions of interest in multiple 2D views in clinic practice. We simulate radiologists' recognition process and propose to exploit the 3D context information in a deeper manner for accurate 3D medical images segmentation. Due to the similarity of human body structure, medical images of different populations have highly similar shape and location information, so we use target region distillation to extract the common segmented region information. Particularly, we proposed two optimizations including Target Area Distillation and Section Attention. Target Area Distillation adds positions information to the original input to let the network has an initial attention of the target, while section attention performs attention extraction in three 2D sections thus with large range of receptive field. We compare our method against several popular networks in two public datasets including ImageCHD and COVID-19. Experimental results show that our proposed method improves the segmentation Dice score by 2-4% over the state-of-the-art methods. Our code has been released to the public (Anonymous link).

Immunogenicity of a recombinant VSV-Vectored SARS-CoV vaccine induced robust immunity in rhesus monkeys after single-dose immunization.

Severe acute respiratory syndrome (SARS) is a highly contagious zoonotic disease caused by SARS coronavirus (SARS-CoV). Since its outbreak in Guangdong Province of China in 2002, SARS has caused 8096 infections and 774 deaths by December 31st, 2003. Although there have been no more SARS cases reported in human populations since 2004, the recent emergence of a novel coronavirus disease (COVID-19) indicates the potential of the recurrence of SARS and other coronavirus disease among humans. Thus, developing a rapid response SARS vaccine to provide protection for human populations is still needed. Spike (S) protein of SARS-CoV can induce neutralizing antibodies, which is a pivotal immunogenic antigen for vaccine development. Here we constructed a recombinant chimeric vesicular stomatitis virus (VSV) VSVΔG-SARS, in which the glycoprotein (G) gene is replaced with the SARS-CoV S gene. VSVΔG-SARS maintains the bullet-like shape of the native VSV, with the heterogeneous S protein incorporated into its surface instead of G protein. The results of safety trials revealed that VSVΔG-SARS is safe and effective in mice at a dose of 1 â€‹× â€‹106 TCID50. More importantly, only a single-dose immunization of 2 â€‹× â€‹107 TCID50 can provide high-level neutralizing antibodies and robust T cell responses to non-human primate animal models. Thus, our data indicate that VSVΔG-SARS can be used as a rapid response vaccine candidate. Our study on the recombinant VSV-vectored SARS-CoV vaccines can accumulate experience and provide a foundation for the new coronavirus disease in the future.

Construction and immunogenicity evaluation of a recombinantnewcastle disease virus expressing SARS-CoV spike protein

Severe Acute Respiratory Syndrome (SARS) is a zoonotic disease that is acute, feverish and accompanied by respiratory system and even multiple organ infections. Although no SARS infection cases have been reported since 2004, the outbreak of new coronavirus pneumonia (COVID-19) in Wuhan, Hubei Province, my country in December 2019 indicates that SARS coronavirus (SARS-CoV) or SARS-like coronavirus (SARSL-CoV) is highly likely to become widespread in the population again. In this study, a full-length cDNA clone pBRN-FL-SARS-CoV-S expressing the SARS-CoV spike protein (S protein) was first constructed, and the Newcastle Disease Virus (NDV) LaSota vaccine strain reverse genetic operating system was used to rescue The recombinant virus rLa-SARS-CoV-S expressing SARS-CoV S protein was identified. After rLa-SARS-CoV-S was infected with BHK-21 cells at a dose of MOI 0.01 for 36 hours, the SARS-CoV S protein was detected by western blot and laser confocal test. The results showed that the S protein was correct in the infected cells. Expressed and accurately located on the cell membrane. After inoculating 10-day-old SPF chicken embryos with rLa-SARS-CoV-S at a dose of 1x104 EID50, allantoic fluid was collected at different time points and the EID50 was determined. The growth kinetic curve of the virus showed that rLa-SARSCoV-S could The chicken embryo grows at high titer, consistent with the parental virus. Dilute the rLa-SARS-CoV-S and parent virus by 10-fold ratio and inoculate 10-day-old SPF chicken embryos and record the death time of each chicken embryo. Calculate the average chicken embryo death time according to the highest dilution of the virus. Lethal time (MDT), the results showed that the MDT of rLa-SARS-CoV-S was 112.8 h and the MDT of NDV LaSota was 96 h, indicating that the recombinant virus still maintains the low pathogenicity characteristics of the NDV LaSota vaccine strain. RLa-SARS-CoV-S and NDV LaSota were injected intramuscularly with 6-week-old BALB/c mice at a dose of 5x106 EID50 and boosted on the 21st day. At the same time, a PBS control group was set up. The results of the mouse safety test showed that all the mice vaccinated with rLa-SARS-CoV-S survived without any clinical symptoms, and the weight gain was consistent with that of the NDV LaSota group and the control group;the mice were treated on 21 d and 42 d after immunization Blood was collected to prepare serum, and the level of IgG antibodies against SARS-CoV S protein in mice was detected by ELISA. The results showed that the recombinant protein can induce mice to produce higher levels of specific IgG antibodies after initial immunization and booster immunization. The level can be maintained for a longer period of time. The results of this study indicate that rLa-SARS-CoV-S has potential value as a SARS-CoV vaccine candidate, and at the same time provides ideas for the development of SARS-CoV-2 vaccines.

The influence of COVID-19 on agricultural economy and emergency mitigation measures in China: A text mining analysis.

Understanding the influence of COVID-19 on China's agricultural economy and the Chinese government's emergency measures to ease the economic impacts of viral spread can offer urgently-needed lessons while this virus continues to spread across the globe. Thus, this study collected over 750,000 words upon the topic of COVID-19 and agriculture from the largest two media channels in China: WeChat and Sina Weibo, and employed web crawler technology and text mining method to explore the influence of COVID-19 on agricultural economy and mitigation measures in China. The results show that: (1) the impact of COVID-19 on China's agricultural economy at the very first phase is mainly reflected in eight aspects as crop production, agricultural products supply, livestock production, farmers' income and employment, economic crop development, agricultural products sales model, leisure agriculture development, and agricultural products trade. (2) The government's immediate countermeasures include resuming agricultural production and farmers' work, providing financial support, stabilizing agricultural production and products supply, promoting agricultural products sale, providing subsidies, providing agricultural technology guidance and field management, and providing assistance to poor farmers to reduce poverty. (3) The order of government's immediate countermeasures is not all in line with the order of impact aspects, which indicates that more-tailored policies should be implemented to mitigate the strikes of COVID-19 on China's agricultural economy in the future.